devel:languages:R:autoCRAN

Large parts of CRAN (cran.r-project.org) mirrored to OBS in a fully automatic way.

This repo contains a large part of CRAN automatically converted to rpm packages. *ALL* packages in the repo are created and kept uptodate(!) in a fully automatic way using the R package CRAN2OBS (gitlab.com/dsteuer/CRAN2OBS). At the moment CRAN2OBS is still subject to many changes, but it already works well enough to bring about 15k packages from CRAN to Suse. If you find packages not working, please contact me. Do not push packages here by hand after manually altering anything in a spec file, please. If you find an important package still missing, send a note, please. May be it is easy to add fitting rules to the scripts. Attention: there are Prefer: lines in the project config. Should be rechecked from time to time. https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/ devel:languages:R:autoCRANsupp

Supplements for the autoCRAN project

autoCRANsupp contains *only* - libraries needed to build a worthy number of R packages that are not in factory/tumbleweed, i.e. udunits2-1 - a link to d:l:R:released/R-base to provide newer versions for older SuSE releases. A lot of packages need the latest R. This project will be as small as possible. In a best case scenario only R-base will remain here to be included for building autoCRAN. https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRANsupp/openSUSE_Tumbleweed/ openSUSE:Factory

The next openSUSE distribution

openSUSE Tumbleweed: The Bleeding Edge, Perfected. Tumbleweed is the ultimate rolling release distribution, providing the latest software as it’s released, built upon a foundation of world-class stability and testing. * Always Current: Get the newest kernel, IDEs, desktops, and applications automatically. * Powerfully Stable: Experience the velocity of a rolling release without sacrificing the reliability you depend on. * Engineered for Professionals: The top choice for Developers, Power Users, and openSUSE Contributors who need the best tools for the job. If you demand the latest stable software, your choice is Tumbleweed. Staging dashboard is located at: https://build.opensuse.org/staging_workflows/openSUSE:Factory List of known devel projects: https://build.opensuse.org/package/view_file/openSUSE:Factory:Staging/dashboard/devel_projects Have a look at http://en.opensuse.org/Portal:Factory for more details. https://download.opensuse.org/tumbleweed/repo/oss/ openSUSE:Tumbleweed

Tumbleweed

Tumbleweed is the openSUSE Rolling Release This OBS Project represents the content of the currently published snapshot. The newer repository for next publish can be found in openSUSE:Factory standard repository. https://download.opensuse.org/repositories/openSUSE:/Tumbleweed/standard/ openSUSE:Tumbleweed

Tumbleweed

The next openSUSE distribution

Meta Clustering with Similarity Network Fusion

Framework to facilitate patient subtyping with similarity network fusion and meta clustering. The similarity network fusion (SNF) algorithm was introduced by Wang et al. (2014) in <doi:10.1038/nmeth.2810>. SNF is a data integration approach that can transform high-dimensional and diverse data types into a single similarity network suitable for clustering with minimal loss of information from each initial data source. The meta clustering approach was introduced by Caruana et al. (2006) in <doi:10.1109/ICDM.2006.103>. Meta clustering involves generating a wide range of cluster solutions by adjusting clustering hyperparameters, then clustering the solutions themselves into a manageable number of qualitatively similar solutions, and finally characterizing representative solutions to find ones that are best for the user's specific context. This package provides a framework to easily transform multi-modal data into a wide range of similarity network fusion-derived cluster solutions as well as to visualize, characterize, and validate those solutions. Core package functionality includes easy customization of distance metrics, clustering algorithms, and SNF hyperparameters to generate diverse clustering solutions; calculation and plotting of associations between features, between patients, and between cluster solutions; and standard cluster validation approaches including resampled measures of cluster stability, standard metrics of cluster quality, and label propagation to evaluate generalizability in unseen data. Associated vignettes guide the user through using the package to identify patient subtypes while adhering to best practices for unsupervised learning.