devel:languages:R:autoCRAN

Large parts of CRAN (cran.r-project.org) mirrored to OBS in a fully automatic way.

This repo contains a large part of CRAN automatically converted to rpm packages. *ALL* packages in the repo are created and kept uptodate(!) in a fully automatic way using the R package CRAN2OBS (gitlab.com/dsteuer/CRAN2OBS). At the moment CRAN2OBS is still subject to many changes, but it already works well enough to bring about 15k packages from CRAN to Suse. If you find packages not working, please contact me. Do not push packages here by hand after manually altering anything in a spec file, please. If you find an important package still missing, send a note, please. May be it is easy to add fitting rules to the scripts. Attention: there are Prefer: lines in the project config. Should be rechecked from time to time. https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/15.6/ deleted

INTERNAL PROJECT

don't delete this project, it's used for internal purposes https://download.opensuse.org/repositories/deleted/deleted/ openSUSE:Leap:15.6

openSUSE Leap borrows packages from SLE. The content of the build media is almost the same as the previous Leap, but the development is drastic different. It includes the binaries (instead of the sources) directly from SLE. https://lists.opensuse.org/opensuse-factory/2020-04/msg00165.html https://download.opensuse.org/repositories/openSUSE:/Leap:/15.6/standard/ openSUSE:Backports:SLE-15-SP6

Backports project for SLE-15-SP6

Backports project for SLE-15-SP6 https://download.opensuse.org/repositories/openSUSE:/Backports:/SLE-15-SP6/standard/ SUSE:SLE-15-SP6:GA

https://download.opensuse.org/repositories/SUSE:/SLE-15-SP6:/GA/pool/ SUSE:SLE-15-SP5:Update

SLE 15 SP5

SLE 15 SP5 https://download.opensuse.org/distribution/leap/15.6/repo/oss/ SUSE:SLE-15-SP5:GA

https://download.opensuse.org/repositories/SUSE:/SLE-15-SP5:/GA/pool/ SUSE:SLE-15-SP4:Update

SLE 15 SP4

SLE 15 SP4 https://download.opensuse.org/distribution/leap/15.6/repo/oss/ SUSE:SLE-15-SP4:GA

https://download.opensuse.org/repositories/SUSE:/SLE-15-SP4:/GA/pool/ SUSE:SLE-15-SP3:Update

SLE 15 SP3

SLE 15 SP3 https://download.opensuse.org/distribution/leap/15.6/repo/oss/ SUSE:SLE-15-SP3:GA

https://download.opensuse.org/repositories/SUSE:/SLE-15-SP3:/GA/pool/ SUSE:SLE-15-SP2:Update

SLE 15 SP2

SLE 15 SP2 https://download.opensuse.org/distribution/leap/15.6/repo/oss/ SUSE:SLE-15-SP2:GA

SLE 15 SP2

SLE 15 SP2 https://download.opensuse.org/repositories/SUSE:/SLE-15-SP2:/GA/pool/ SUSE:SLE-15-SP1:Update

SLE 15 SP1

SLE 15 SP1 https://download.opensuse.org/distribution/leap/15.6/repo/oss/ SUSE:SLE-15-SP1:GA

SLE 15 SP1

SLE 15 SP1 https://download.opensuse.org/repositories/SUSE:/SLE-15-SP1:/GA/pool/ SUSE:SLE-15:Update

SLE 15

SLE 15 https://download.opensuse.org/distribution/leap/15.6/repo/oss/ SUSE:SLE-15:GA

SLE 15

SLE 15 https://download.opensuse.org/repositories/SUSE:/SLE-15:/GA/pool/ R-updog

Flexible Genotyping for Polyploids

Implements empirical Bayes approaches to genotype polyploids from next generation sequencing data while accounting for allele bias, overdispersion, and sequencing error. The main functions are flexdog() and multidog(), which allow the specification of many different genotype distributions. Also provided are functions to simulate genotypes, rgeno(), and read-counts, rflexdog(), as well as functions to calculate oracle genotyping error rates, oracle_mis(), and correlation with the true genotypes, oracle_cor(). These latter two functions are useful for read depth calculations. Run browseVignettes(package = "updog") in R for example usage. See Gerard et al. (2018) <doi:10.1534/genetics.118.301468> and Gerard and Ferrao (2020) <doi:10.1093/bioinformatics/btz852> for details on the implemented methods.