devel:languages:R:autoCRAN Large parts of CRAN (cran.r-project.org) mirrored to OBS in a fully automatic way. This repo contains a large part of CRAN automatically converted to rpm packages. *ALL* packages in the repo are created and kept uptodate(!) in a fully automatic way using the R package CRAN2OBS (gitlab.com/dsteuer/CRAN2OBS). At the moment CRAN2OBS is still subject to many changes, but it already works well enough to bring about 15k packages from CRAN to Suse. If you find packages not working, please contact me. Do not push packages here by hand after manually altering anything in a spec file, please. If you find an important package still missing, send a note, please. May be it is easy to add fitting rules to the scripts. Attention: there are Prefer: lines in the project config. Should be rechecked from time to time. https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/15.5/ deleted INTERNAL PROJECT don't delete this project, it's used for internal purposes https://download.opensuse.org/repositories/deleted/deleted/ openSUSE:Leap:15.5 openSUSE Leap borrows packages from SLE. The content of the build media is almost the same as Leap:15.2, but the development is drastic different. It includes the binaries (instead of the sources) directly from SLE. https://lists.opensuse.org/opensuse-factory/2020-04/msg00165.html https://download.opensuse.org/repositories/openSUSE:/Leap:/15.5/standard/ openSUSE:Backports:SLE-15-SP5 Backports project for SLE-15-SP5 Backports project for SLE-15-SP5 https://download.opensuse.org/repositories/openSUSE:/Backports:/SLE-15-SP5/standard/ SUSE:SLE-15-SP5:GA https://download.opensuse.org/repositories/SUSE:/SLE-15-SP5:/GA/pool/ SUSE:SLE-15-SP4:Update SLE 15 SP4 SLE 15 SP4 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP4:GA https://download.opensuse.org/repositories/SUSE:/SLE-15-SP4:/GA/pool/ SUSE:SLE-15-SP3:Update SLE 15 SP3 SLE 15 SP3 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP3:GA https://download.opensuse.org/repositories/SUSE:/SLE-15-SP3:/GA/pool/ SUSE:SLE-15-SP2:Update SLE 15 SP2 SLE 15 SP2 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP2:GA SLE 15 SP2 SLE 15 SP2 https://download.opensuse.org/repositories/SUSE:/SLE-15-SP2:/GA/pool/ SUSE:SLE-15-SP1:Update SLE 15 SP1 SLE 15 SP1 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP1:GA SLE 15 SP1 SLE 15 SP1 https://download.opensuse.org/repositories/SUSE:/SLE-15-SP1:/GA/pool/ SUSE:SLE-15:Update SLE 15 SLE 15 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15:GA SLE 15 SLE 15 https://download.opensuse.org/repositories/SUSE:/SLE-15:/GA/pool/ R-SRS Scaling with Ranked Subsampling Analysis of species count data in ecology often requires normalization to an identical sample size. Rarefying (random subsampling without replacement), which is a popular method for normalization, has been widely criticized for its poor reproducibility and potential distortion of the community structure. In the context of microbiome count data, researchers explicitly advised against the use of rarefying. An alternative to rarefying is scaling with ranked subsampling (SRS). SRS consists of two steps. In the first step, the total counts for all OTUs (operational taxonomic units) or species in each sample are divided by a scaling factor chosen in such a way that the sum of the scaled counts Cscaled equals Cmin. In the second step, the non-integer Cscaled values are converted into integers by an algorithm that we dub ranked subsampling. The Cscaled value for each OTU or species is split into the integer part Cint (Cint = floor(Cscaled)) and the fractional part Cfrac (Cfrac = Cscaled - Cints). Since the sum of Cint is smaller or equal to Cmin, additional delta C = Cmin - the sum of Cint counts have to be added to the library to reach the total count of Cmin. This is achieved as follows. OTUs are ranked in the descending order of their Cfrac values. Beginning with the OTU of the highest rank, single count per OTU is added to the normalized library until the total number of added counts reaches delta C and the sum of all counts in the normalized library equals Cmin. When the lowest Cfrag involved in picking delta C counts is shared by several OTUs, the OTUs used for adding a single count to the library are selected in the order of their Cint values. This selection minimizes the effect of normalization on the relative frequencies of OTUs. OTUs with identical Cfrag as well as Cint are sampled randomly without replacement. See Beule & Karlovsky (2020) <doi:10.7717/peerj.9593> for details.