devel:languages:R:autoCRAN

Large parts of CRAN (cran.r-project.org) mirrored to OBS in a fully automatic way.

This repo contains a large part of CRAN automatically converted to rpm packages. *ALL* packages in the repo are created and kept uptodate(!) in a fully automatic way using the R package CRAN2OBS (gitlab.com/dsteuer/CRAN2OBS). At the moment CRAN2OBS is still subject to many changes, but it already works well enough to bring about 15k packages from CRAN to Suse. If you find packages not working, please contact me. Do not push packages here by hand after manually altering anything in a spec file, please. If you find an important package still missing, send a note, please. May be it is easy to add fitting rules to the scripts. Attention: there are Prefer: lines in the project config. Should be rechecked from time to time. https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/15.5/ deleted

INTERNAL PROJECT

don't delete this project, it's used for internal purposes https://download.opensuse.org/repositories/deleted/deleted/ openSUSE:Leap:15.5

openSUSE Leap borrows packages from SLE. The content of the build media is almost the same as Leap:15.2, but the development is drastic different. It includes the binaries (instead of the sources) directly from SLE. https://lists.opensuse.org/opensuse-factory/2020-04/msg00165.html https://download.opensuse.org/repositories/openSUSE:/Leap:/15.5/standard/ openSUSE:Backports:SLE-15-SP5

Backports project for SLE-15-SP5

Backports project for SLE-15-SP5 https://download.opensuse.org/repositories/openSUSE:/Backports:/SLE-15-SP5/standard/ SUSE:SLE-15-SP5:GA

https://download.opensuse.org/repositories/SUSE:/SLE-15-SP5:/GA/pool/ SUSE:SLE-15-SP4:Update

SLE 15 SP4

SLE 15 SP4 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP4:GA

https://download.opensuse.org/repositories/SUSE:/SLE-15-SP4:/GA/pool/ SUSE:SLE-15-SP3:Update

SLE 15 SP3

SLE 15 SP3 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP3:GA

https://download.opensuse.org/repositories/SUSE:/SLE-15-SP3:/GA/pool/ SUSE:SLE-15-SP2:Update

SLE 15 SP2

SLE 15 SP2 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP2:GA

SLE 15 SP2

SLE 15 SP2 https://download.opensuse.org/repositories/SUSE:/SLE-15-SP2:/GA/pool/ SUSE:SLE-15-SP1:Update

SLE 15 SP1

SLE 15 SP1 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15-SP1:GA

SLE 15 SP1

SLE 15 SP1 https://download.opensuse.org/repositories/SUSE:/SLE-15-SP1:/GA/pool/ SUSE:SLE-15:Update

SLE 15

SLE 15 https://download.opensuse.org/distribution/leap/15.5/repo/oss/ SUSE:SLE-15:GA

SLE 15

SLE 15 https://download.opensuse.org/repositories/SUSE:/SLE-15:/GA/pool/ R-Canopy

Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing

A statistical framework and computational procedure for identifying the sub-populations within a tumor, determining the mutation profiles of each subpopulation, and inferring the tumor's phylogenetic history. The input are variant allele frequencies (VAFs) of somatic single nucleotide alterations (SNAs) along with allele-specific coverage ratios between the tumor and matched normal sample for somatic copy number alterations (CNAs). These quantities can be directly taken from the output of existing software. Canopy provides a general mathematical framework for pooling data across samples and sites to infer the underlying parameters. For SNAs that fall within CNA regions, Canopy infers their temporal ordering and resolves their phase. When there are multiple evolutionary configurations consistent with the data, Canopy outputs all configurations along with their confidence assessment.